This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/). The package aids in performing flux balance analysis (FBA) on the similar lines of the COBRA toolbox(http://systemsbiology.ucsd.edu/Downloads/Cobra_Toolbox) but with the added value of visualizing the results in the form of a metabolic network using the graphviz framework.
| Version: | 1.8 |
| Depends: | R (≥ 2.14.0), LIM, igraph, Rgraphviz, minet, graph, rsbml, limSolve, diagram, hyperdraw |
| Published: | 2013-03-06 |
| Author: | Anand K. Gavai |
| Maintainer: | Anand K. Gavai <anand.gavai at gmail.com> |
| License: | GPL (≥ 2) |
| Copyright: | THE BIGG DATABASE PROVIDED HEREIN IS ON AN "AS IS" BASIS, AND THE UNIVERSITY OF CALIFORNIA HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS. THE UNIVERSITY OF CALIFORNIA MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF ANY KIND, EITHER IMPLIED OR EXPRESS, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE, OR THAT THE USE OF THE BIGG DATABASE WILL NOT INFRINGE ANY PATENT, TRADEMARK OR OTHER RIGHTS. |
| URL: | http://www.r-project.org, http://www.bioinformatics.nl |
| NeedsCompilation: | no |
| CRAN checks: | BiGGR results |
| Package source: | BiGGR_1.8.tar.gz |
| OS X binary: | not available, see check log. |
| Windows binary: | BiGGR_1.8.zip |
| Reference manual: | BiGGR.pdf |
| Old sources: | BiGGR archive |