Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing, ACE method (CGH Explorer), HMM, BioHMM, GLAD, CGHseg, and Price's modification of Smith & Waterman's algorith. Most computations are parallelized. Figures are imagemaps with links to IDClight (http://idclight.bioinfo.cnio.es).
| Version: | 1.3-9 |
| Depends: | R (≥ 2.2.1), cgh, tilingArray, aCGH, cghMCR, papply, GDD, waveslim, cluster, snapCGH, Hmisc |
| Suggests: | Rmpi, GLAD, DNAcopy |
| Date: | 2008-10-27 |
| Author: | Ramon Diaz-Uriarte, Oscar M. Rueda. Wavelet-based aCGH smoothing code from Li Hsu and Douglas Grove. Imagemap code from Barry Rowlingson |
| Maintainer: | Ramon Diaz-Uriarte <rdiaz02 at gmail.com> |
| License: | GPL version 2 or newer |
| URL: | http://adacgh2.bioinfo.cnio.es, http://launchpad.net/adacgh |
| CRAN checks: | ADaCGH results |
Downloads:
| Package source: | ADaCGH_1.3-9.tar.gz |
| MacOS X binary: | not available, see check log. |
| Windows binary: | not available, see ReadMe. |
| Reference manual: | ADaCGH.pdf |
| Old sources: | ADaCGH archive |